miRNA display CGI


Results 41 - 60 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 36354 0.89 0.838078
Target:  5'- uGAAUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 6228 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 40093 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 43020 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 151225 0.87 0.903005
Target:  5'- uGAGUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136001 0.86 0.934406
Target:  5'- -----cAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 169167 0.86 0.934406
Target:  5'- ---gAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 71498 0.86 0.928718
Target:  5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 1177 0.86 0.928718
Target:  5'- -cAUAUAUacAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUA--UCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 87103 0.86 0.922733
Target:  5'- --uUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 162753 0.85 0.954221
Target:  5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 27813 0.85 0.944896
Target:  5'- -uGUAUAUAGCUUAGGcaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29134 0.85 0.954221
Target:  5'- -uAUAUAUAGUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 110138 0.85 0.944896
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 135929 0.85 0.944896
Target:  5'- aAGUAUGUAGCUUAGGUgUUAggaucaAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAU------UUCCC- -5'
28286 5' -40.1 NC_005902.1 + 75129 0.84 0.966106
Target:  5'- -cAUAUAUAGCUUAGGUauaAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 43886 0.84 0.966106
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 39614 0.84 0.966106
Target:  5'- uGAAU-UAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- -CUUAuAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 65794 0.83 0.980783
Target:  5'- uGAGcAUAUAGCUcAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUaUAUAUCGAaUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 78118 0.83 0.975629
Target:  5'- aAGUAUAUAGCUUAGaGUUUaUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUC-CAGA-AUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.