miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 135220 0.81 0.992626
Target:  5'- uGAGUAUAUAGUUUAGaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 100135 0.81 0.990094
Target:  5'- -cAUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 50228 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 86055 0.81 0.990094
Target:  5'- -cAUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 170618 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 48608 0.81 0.991433
Target:  5'- uGAAUAUAUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 130915 0.81 0.993682
Target:  5'- ----uUAUAGCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuauAUAUCGAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 167185 0.81 0.993682
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 100701 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 23507 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29611 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 142026 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 30829 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 138855 0.8 0.996762
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 143803 0.8 0.996143
Target:  5'- -uGUAUAUAGCUUAGGUgUUaAGAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAA-UUUCCc -5'
28286 5' -40.1 NC_005902.1 + 124421 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 80098 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 146762 0.8 0.994613
Target:  5'- aAGUAUAUacauGGUUUAGGUgUUAGAGGGu -3'
miRNA:   3'- cUUAUAUA----UCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 155244 0.8 0.994613
Target:  5'- -cGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 139720 0.8 0.995353
Target:  5'- gGAAUAUAUAGCUUGGGUaCUUAuccuuuaaauccuAAGGc -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCA-GAAU-------------UUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.