miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 30829 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 142026 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 29611 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 23507 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 138855 0.8 0.996762
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 143803 0.8 0.996143
Target:  5'- -uGUAUAUAGCUUAGGUgUUaAGAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAA-UUUCCc -5'
28286 5' -40.1 NC_005902.1 + 124421 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 100701 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 155244 0.8 0.994613
Target:  5'- -cGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 146762 0.8 0.994613
Target:  5'- aAGUAUAUacauGGUUUAGGUgUUAGAGGGu -3'
miRNA:   3'- cUUAUAUA----UCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 156430 0.79 0.998148
Target:  5'- uGAGUAUAUAGCUUAaaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 143063 0.79 0.997297
Target:  5'- -uAUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 180391 0.79 0.998481
Target:  5'- uGAGUAUAUAGCUUAauUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 72256 0.79 0.997297
Target:  5'- -uAUAUAUAGCUUAGuUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 134366 0.78 0.999355
Target:  5'- uGAGUAUAUAGCUUAaGUgUUaAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAA-UUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 175652 0.78 0.999355
Target:  5'- uGAGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16058 0.78 0.999193
Target:  5'- uGAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 110215 0.77 0.999488
Target:  5'- cGAGUAUAUAuaaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUc--GAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29254 0.77 0.999488
Target:  5'- aAGUAUAUAGCUUAGGUgUU--AGGa -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAuuUCCc -5'
28286 5' -40.1 NC_005902.1 + 22594 0.77 0.999597
Target:  5'- --uUAUAUAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUC-GAAUCCaGAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.