miRNA display CGI


Results 61 - 80 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 162434 0.82 0.985076
Target:  5'- -uGUGUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 146944 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 105307 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 52367 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 140961 0.82 0.985076
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 13435 0.82 0.985076
Target:  5'- aAGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 99651 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 169575 0.82 0.986926
Target:  5'- cGAGUGUAUAGUUUAGGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 49472 0.82 0.986926
Target:  5'- aAGUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 76244 0.82 0.986926
Target:  5'- aAAUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 15340 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 23319 0.82 0.988595
Target:  5'- uGAAUAUGUAGCUUAGGUau--AAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgaauUUCCc -5'
28286 5' -40.1 NC_005902.1 + 156828 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 178439 0.82 0.988595
Target:  5'- uGAGUAUAUAaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 144057 0.82 0.988595
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAc-- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 5421 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 50228 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 162575 0.81 0.990094
Target:  5'- aAGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- cUUAUAUAUCgAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 170618 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 100135 0.81 0.990094
Target:  5'- -cAUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.