Results 81 - 100 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 63275 | 0.71 | 1 |
Target: 5'- ---cAUAUAGCUUaaAGGU--UAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAA--UCCAgaAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 184779 | 0.71 | 1 |
Target: 5'- -uAUAUAUAGCcUAGGUgUUGAAGa- -3' miRNA: 3'- cuUAUAUAUCGaAUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 118112 | 0.71 | 1 |
Target: 5'- -uGUAUAUAGUUagGGGUC--AAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAa-UCCAGaaUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 137661 | 0.72 | 1 |
Target: 5'- aAGUAcAUAaCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cUUAUaUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 16598 | 0.72 | 1 |
Target: 5'- aAAUAUAcAGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cUUAUAUaUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 137930 | 0.72 | 1 |
Target: 5'- -uGUAUAUAGCUUAaaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 156949 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAGCUUAaauaUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 90094 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAaCUUAaGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUcGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157207 | 0.69 | 1 |
Target: 5'- aAAUAUAUAGCUUAGGUaUUAAc--- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 111436 | 0.69 | 1 |
Target: 5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 173499 | 0.7 | 1 |
Target: 5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 159782 | 0.7 | 1 |
Target: 5'- aAGUAUAUAGCUaAGua-UUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAaUCcagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 122674 | 0.7 | 1 |
Target: 5'- uGAGUGUAUAGCUUAGaGaUgUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCGAAUC-C-AgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5214 | 0.7 | 1 |
Target: 5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3' miRNA: 3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 149878 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 118682 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGU-UAGGggUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 22654 | 0.7 | 1 |
Target: 5'- -cAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 162063 | 0.66 | 1 |
Target: 5'- --uUAUAUAGUUUAGaUgUUAAAGGa -3' miRNA: 3'- cuuAUAUAUCGAAUCcAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 131702 | 0.72 | 0.999999 |
Target: 5'- -uAUAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 23451 | 0.73 | 0.999999 |
Target: 5'- uGAGUAUAUAGCUUAGGUauuuaUUAAc--- -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAg----AAUUuccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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