Results 101 - 120 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 107181 | 0.73 | 0.999999 |
Target: 5'- uGAGUAUAUAGCUUaaGGGUUa-AAAGGu -3' miRNA: 3'- -CUUAUAUAUCGAA--UCCAGaaUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 20324 | 0.72 | 0.999999 |
Target: 5'- -uAUAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 131702 | 0.72 | 0.999999 |
Target: 5'- -uAUAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 88323 | 0.73 | 0.999998 |
Target: 5'- aAAUAUAUAGCUUAGa---UAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCcagaAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157065 | 0.73 | 0.999998 |
Target: 5'- -uGUGUAUAGCUUAGGUgUUAAc--- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 55096 | 0.73 | 0.999998 |
Target: 5'- uGAGUAUA-AGCuUUAGGaUUUAAAGGGu -3' miRNA: 3'- -CUUAUAUaUCG-AAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 92331 | 0.73 | 0.999996 |
Target: 5'- --cUAUAUAGCUUAGGU---AAAGGa -3' miRNA: 3'- cuuAUAUAUCGAAUCCAgaaUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 73970 | 0.73 | 0.999996 |
Target: 5'- -uAUAUAUGaUUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 113822 | 0.73 | 0.999996 |
Target: 5'- -uAUAUAUAGUUUAGGUgUUAAcGGa -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUuCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 156591 | 0.73 | 0.999996 |
Target: 5'- -uAUAUAUAaUUUGGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157888 | 0.73 | 0.999996 |
Target: 5'- --uUAUAUAGCUUAGGUgUUAAAa-- -3' miRNA: 3'- cuuAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 137787 | 0.73 | 0.999996 |
Target: 5'- -uAUAUAUAGCUUAaGUgUUAAAGGa -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 12863 | 0.74 | 0.999994 |
Target: 5'- -uGUAUAUAaCUUAGGagUUAAGGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 25159 | 0.74 | 0.999994 |
Target: 5'- uGAGUAUAUAGCUUAGGggUUAAAu-- -3' miRNA: 3'- -CUUAUAUAUCGAAUCCagAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 173216 | 0.74 | 0.999994 |
Target: 5'- -uAUAUAUAaCUUAGGagUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 153064 | 0.74 | 0.999994 |
Target: 5'- uGAGUAUAUAGUUUAGGUgUUAAc--- -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 15509 | 0.74 | 0.999994 |
Target: 5'- -uAUAUAUAGUUUAGGUgUUAAAaGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5691 | 0.74 | 0.999992 |
Target: 5'- -uGUAUAUAGCUUAGGggUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCCagAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 55158 | 0.74 | 0.999992 |
Target: 5'- -uGUAUAUAGCUUGaGagUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 34756 | 0.74 | 0.999988 |
Target: 5'- -uAUAUAUAGCUUAGGUgUUAAGa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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