miRNA display CGI


Results 121 - 140 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 144191 0.74 0.999988
Target:  5'- -uGUAUAUAGUUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 120289 0.74 0.999988
Target:  5'- -cAUAUAUAGUUcAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAaUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 11449 0.74 0.999983
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAcucGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUu--CCc -5'
28286 5' -40.1 NC_005902.1 + 134439 0.74 0.999983
Target:  5'- -------cAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuuauauaUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 182966 0.74 0.999983
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAu-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 77183 0.74 0.999983
Target:  5'- -uAUAUAUAaUUUAGGUgUUGAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 124518 0.75 0.999976
Target:  5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131103 0.75 0.999976
Target:  5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 48267 0.75 0.999967
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 163426 0.75 0.999964
Target:  5'- aAAUAUAUAGCUUAGGUgUUAacccuuuaaauccuAAGGc -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAU--------------UUCCc -5'
28286 5' -40.1 NC_005902.1 + 92202 0.75 0.999955
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAuGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 84909 0.75 0.999955
Target:  5'- uGAGUAUAUAGCUUAaauaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcca-GAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 3108 0.75 0.999955
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 68314 0.75 0.999955
Target:  5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16529 0.75 0.999955
Target:  5'- aGAUAUAUAGCUcAGGUgUUAAAGa- -3'
miRNA:   3'- cUUAUAUAUCGAaUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 19914 0.75 0.999955
Target:  5'- -uGUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 116860 0.75 0.999955
Target:  5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 182605 0.75 0.999939
Target:  5'- aAAUAUAaGGCUUAGuUUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUCGAAUCcAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 69410 0.76 0.999918
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 75853 0.76 0.999918
Target:  5'- -uGUAUAUAGUUcAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAaUCCAgAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.