miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 51463 0.72 1
Target:  5'- -uGUAUAUAGCUUAaaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 52205 0.76 0.999856
Target:  5'- aGGUAUAUcaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAucGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 52367 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 52478 0.69 1
Target:  5'- cGAAUAUA-AGCccUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCGa-AUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 54079 0.7 1
Target:  5'- aGAUAUAUAGUUUAGGUgUUAAc--- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 54377 0.96 0.534325
Target:  5'- -uAUGUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 55096 0.73 0.999998
Target:  5'- uGAGUAUA-AGCuUUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCG-AAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 55158 0.74 0.999992
Target:  5'- -uGUAUAUAGCUUGaGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 57267 0.98 0.429101
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 58658 0.69 1
Target:  5'- uGAGUAUAUAGaacaagUA-GUCUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCga----AUcCAGAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 63275 0.71 1
Target:  5'- ---cAUAUAGCUUaaAGGU--UAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAA--UCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 63399 0.71 1
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUC-CC- -5'
28286 5' -40.1 NC_005902.1 + 65668 0.7 1
Target:  5'- aAGUAUA-AGcCUUAGGaUUUAAAGGGg -3'
miRNA:   3'- cUUAUAUaUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 65794 0.83 0.980783
Target:  5'- uGAGcAUAUAGCUcAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUaUAUAUCGAaUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 67030 0.98 0.459455
Target:  5'- uGAGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 67746 0.71 1
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 68110 0.69 1
Target:  5'- ---cAUAUAaCUUAGGUggUAGAGGGu -3'
miRNA:   3'- cuuaUAUAUcGAAUCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 68314 0.75 0.999955
Target:  5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 69098 0.68 1
Target:  5'- --uUAUAUAaCcUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUcGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 69159 0.77 0.999756
Target:  5'- --uUGUAUAGuCUUAGGaaUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUC-GAAUCCagAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.