miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 69410 0.76 0.999918
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 71498 0.86 0.928718
Target:  5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 71688 0.76 0.999891
Target:  5'- -uGUAUAUAGCUUAGGUgUUAGAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 72256 0.79 0.997297
Target:  5'- -uAUAUAUAGCUUAGuUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 73970 0.73 0.999996
Target:  5'- -uAUAUAUGaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 74812 0.8 0.996762
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 75129 0.84 0.966106
Target:  5'- -cAUAUAUAGCUUAGGUauaAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 75853 0.76 0.999918
Target:  5'- -uGUAUAUAGUUcAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAaUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 76044 0.67 1
Target:  5'- ---aAUAUAGCUUAGauaUUGAAGGa -3'
miRNA:   3'- cuuaUAUAUCGAAUCcagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 76126 1.02 0.304538
Target:  5'- ---cAUAUAGCUUAGGUCUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 76244 0.82 0.986926
Target:  5'- aAAUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 76683 0.8 0.996762
Target:  5'- -uAUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 77183 0.74 0.999983
Target:  5'- -uAUAUAUAaUUUAGGUgUUGAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 78118 0.83 0.975629
Target:  5'- aAGUAUAUAGCUUAGaGUUUaUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUC-CAGA-AUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 78239 0.67 1
Target:  5'- aAGUAUAUAGCUUAGaUgUUAAAGa- -3'
miRNA:   3'- cUUAUAUAUCGAAUCcAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 80098 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 80775 1.01 0.328724
Target:  5'- uGggUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 81322 0.68 1
Target:  5'- uGAGUAUAUAGCUUAaaagUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 81949 0.68 1
Target:  5'- aAGUAUAUAGCUUAag---UAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUccagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 84909 0.75 0.999955
Target:  5'- uGAGUAUAUAGCUUAaauaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcca-GAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.