miRNA display CGI


Results 121 - 140 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 84968 0.66 1
Target:  5'- -cAUAUAUAGUgUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGaAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 85095 0.7 1
Target:  5'- -----aAUAGCUUAGGagUUuAGGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCCagAAuUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 85372 0.77 0.999488
Target:  5'- -cAUAUAUAGCUUAGauaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 85940 0.68 1
Target:  5'- ---aAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 86055 0.81 0.990094
Target:  5'- -cAUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 86483 1.03 0.260318
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 87103 0.86 0.922733
Target:  5'- --uUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 87406 0.89 0.828825
Target:  5'- -uGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88323 0.73 0.999998
Target:  5'- aAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCcagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88607 0.92 0.692598
Target:  5'- ---aGUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88865 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 90094 0.71 1
Target:  5'- uGAGUAUAUAaCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUcGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 90276 0.71 1
Target:  5'- uGAAUAUAUAGCUUAaGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 90584 0.68 1
Target:  5'- --uUGUAUaAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 90635 0.68 1
Target:  5'- -cAUAUAUAaUUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 92202 0.75 0.999955
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAuGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 92331 0.73 0.999996
Target:  5'- --cUAUAUAGCUUAGGU---AAAGGa -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgaaUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 94032 0.81 0.993682
Target:  5'- -cAUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAg---------AAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 94183 0.97 0.50162
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 95983 0.72 1
Target:  5'- -uGUAUAUAaCUUAGGUgUUAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.