miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 142026 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 140961 0.82 0.985076
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 139784 0.68 1
Target:  5'- --uUAUAUaAGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 139720 0.8 0.995353
Target:  5'- gGAAUAUAUAGCUUGGGUaCUUAuccuuuaaauccuAAGGc -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCA-GAAU-------------UUCCc -5'
28286 5' -40.1 NC_005902.1 + 139108 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUU-UCCc -5'
28286 5' -40.1 NC_005902.1 + 138855 0.8 0.996762
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 138805 0.97 0.50162
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 137930 0.72 1
Target:  5'- -uGUAUAUAGCUUAaaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 137817 0.7 1
Target:  5'- aAAUAUGUAGCUUAaGagUUAAAGGa -3'
miRNA:   3'- cUUAUAUAUCGAAUcCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 137787 0.73 0.999996
Target:  5'- -uAUAUAUAGCUUAaGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 137661 0.72 1
Target:  5'- aAGUAcAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUaUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136931 0.68 1
Target:  5'- uGAGUAUAUAGUgUAGGUaUUAAAGuGa -3'
miRNA:   3'- -CUUAUAUAUCGaAUCCAgAAUUUC-Cc -5'
28286 5' -40.1 NC_005902.1 + 136280 0.71 1
Target:  5'- aAAUAUAUAGUUUAGGUgUUGAGa-- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 136088 0.91 0.758466
Target:  5'- -uGUAUAUAGCUUAGGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 136001 0.86 0.934406
Target:  5'- -----cAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 135929 0.85 0.944896
Target:  5'- aAGUAUGUAGCUUAGGUgUUAggaucaAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAU------UUCCC- -5'
28286 5' -40.1 NC_005902.1 + 135830 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 135220 0.81 0.992626
Target:  5'- uGAGUAUAUAGUUUAGaUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 134439 0.74 0.999983
Target:  5'- -------cAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuuauauaUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 134366 0.78 0.999355
Target:  5'- uGAGUAUAUAGCUUAaGUgUUaAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAA-UUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.