miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 134192 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131990 0.9 0.799775
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 131702 0.72 0.999999
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 131169 1.03 0.260318
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131155 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 131103 0.75 0.999976
Target:  5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 130971 0.68 1
Target:  5'- --uUAUAUAcaagugaaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUc-------GAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 130915 0.81 0.993682
Target:  5'- ----uUAUAGCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuauAUAUCGAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 127508 0.69 1
Target:  5'- aGAAUGUG-AGCaaucAGGaagUCUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCGaa--UCC---AGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 127424 0.8 0.996762
Target:  5'- -uAUAUAcAGCUUAaGUCUUAAAGGGu -3'
miRNA:   3'- cuUAUAUaUCGAAUcCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 125575 0.96 0.534325
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 124518 0.75 0.999976
Target:  5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 124421 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 122802 0.96 0.534325
Target:  5'- cGAGUAUAUAGCUUAGGggUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 122674 0.7 1
Target:  5'- uGAGUGUAUAGCUUAGaGaUgUUAAAGa- -3'
miRNA:   3'- -CUUAUAUAUCGAAUC-C-AgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 120289 0.74 0.999988
Target:  5'- -cAUAUAUAGUUcAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAaUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 118682 0.7 1
Target:  5'- -uAUAUAUAGU-UAGGggUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGaAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 118112 0.71 1
Target:  5'- -uGUAUAUAGUUagGGGUC--AAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAa-UCCAGaaUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 116860 0.75 0.999955
Target:  5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 116815 0.68 1
Target:  5'- gGAGUAUA---CUUAGGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUaucGAAUCCAgAAUUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.