miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 116672 0.69 1
Target:  5'- ---cAUAUAGUUUAGGUgUUAAAcGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 114843 0.71 1
Target:  5'- -uGUAUAUAGCUUaaguguuaaaaAGGU--UAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAA-----------UCCAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 114436 0.97 0.480312
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 114289 0.68 1
Target:  5'- aAGUAUGUAGUgUAGGUgUUAAAaGGu -3'
miRNA:   3'- cUUAUAUAUCGaAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 113822 0.73 0.999996
Target:  5'- -uAUAUAUAGUUUAGGUgUUAAcGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUuCCc -5'
28286 5' -40.1 NC_005902.1 + 113211 0.7 1
Target:  5'- aGAAUAUGgAGCUaUAGGUUUaAAAGGu -3'
miRNA:   3'- -CUUAUAUaUCGA-AUCCAGAaUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 111436 0.69 1
Target:  5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 110215 0.77 0.999488
Target:  5'- cGAGUAUAUAuaaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUc--GAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 110138 0.85 0.944896
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 109953 1.13 0.081113
Target:  5'- uGAAUAUAUAGCUUAGGUCUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 107830 0.66 1
Target:  5'- -cGUAUAUAGCUUAGaUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 107181 0.73 0.999999
Target:  5'- uGAGUAUAUAGCUUaaGGGUUa-AAAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAA--UCCAGaaUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 105307 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 104865 0.89 0.828825
Target:  5'- -cAUAUAUAGCUUAGGUagguaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAg----AAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104205 0.94 0.601682
Target:  5'- --uUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104120 0.68 1
Target:  5'- -----cAUGGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 101227 0.7 1
Target:  5'- ---cAUAUAGCUUAaGagUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUcCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 101108 0.69 1
Target:  5'- -uGUAUAUuGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAuCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 100701 0.8 0.99543
Target:  5'- -uGUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 100424 0.72 1
Target:  5'- cAGUAUAUAGCUUaAGGg-UUAAAGGa -3'
miRNA:   3'- cUUAUAUAUCGAA-UCCagAAUUUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.