Results 81 - 100 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 139720 | 0.8 | 0.995353 |
Target: 5'- gGAAUAUAUAGCUUGGGUaCUUAuccuuuaaauccuAAGGc -3' miRNA: 3'- -CUUAUAUAUCGAAUCCA-GAAU-------------UUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 145975 | 0.8 | 0.996143 |
Target: 5'- -cAUAUAUAGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 76683 | 0.8 | 0.996762 |
Target: 5'- -uAUAUAUAGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 143063 | 0.79 | 0.997297 |
Target: 5'- -uAUAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 134366 | 0.78 | 0.999355 |
Target: 5'- uGAGUAUAUAGCUUAaGUgUUaAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUcCAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 3108 | 0.75 | 0.999955 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 116860 | 0.75 | 0.999955 |
Target: 5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 52367 | 0.82 | 0.985076 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 162753 | 0.85 | 0.954221 |
Target: 5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 71498 | 0.86 | 0.928718 |
Target: 5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3' miRNA: 3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 107181 | 0.73 | 0.999999 |
Target: 5'- uGAGUAUAUAGCUUaaGGGUUa-AAAGGu -3' miRNA: 3'- -CUUAUAUAUCGAA--UCCAGaaUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 95983 | 0.72 | 1 |
Target: 5'- -uGUAUAUAaCUUAGGUgUUAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 136280 | 0.71 | 1 |
Target: 5'- aAAUAUAUAGUUUAGGUgUUGAGa-- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 63399 | 0.71 | 1 |
Target: 5'- -uGUAUAUAGCUUAGaUgUUAAAGaGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAAUUUC-CC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 137817 | 0.7 | 1 |
Target: 5'- aAAUAUGUAGCUUAaGagUUAAAGGa -3' miRNA: 3'- cUUAUAUAUCGAAUcCagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 114436 | 0.97 | 0.480312 |
Target: 5'- uGAGUAUAUAGCUUAGGUgUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 13225 | 0.96 | 0.523333 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 104205 | 0.94 | 0.601682 |
Target: 5'- --uUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuuAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 154625 | 0.91 | 0.736929 |
Target: 5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 6228 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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