miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 143507 0.71 1
Target:  5'- uGAGUgaGUGUAGCaaacgUUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUA--UAUAUCG-----AAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 85095 0.7 1
Target:  5'- -----aAUAGCUUAGGagUUuAGGGGu -3'
miRNA:   3'- cuuauaUAUCGAAUCCagAAuUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 26300 0.7 1
Target:  5'- -uAUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 52478 0.69 1
Target:  5'- cGAAUAUA-AGCccUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCGa-AUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 40997 0.69 1
Target:  5'- ---cAUAUAGCUUAGGUgcUAAAGa- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgaAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 143063 0.79 0.997297
Target:  5'- -uAUAUAUAGCUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 76683 0.8 0.996762
Target:  5'- -uAUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 114436 0.97 0.480312
Target:  5'- uGAGUAUAUAGCUUAGGUgUUAAAGGa -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 13225 0.96 0.523333
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 104205 0.94 0.601682
Target:  5'- --uUAUAUAGCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 154625 0.91 0.736929
Target:  5'- -uGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 6228 0.87 0.903005
Target:  5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 71498 0.86 0.928718
Target:  5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 162753 0.85 0.954221
Target:  5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 52367 0.82 0.985076
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 156828 0.82 0.988595
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 86055 0.81 0.990094
Target:  5'- -cAUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 23507 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 139720 0.8 0.995353
Target:  5'- gGAAUAUAUAGCUUGGGUaCUUAuccuuuaaauccuAAGGc -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCA-GAAU-------------UUCCc -5'
28286 5' -40.1 NC_005902.1 + 145975 0.8 0.996143
Target:  5'- -cAUAUAUAGCUUAaGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.