miRNA display CGI


Results 121 - 140 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 28964 0.7 1
Target:  5'- --cUGUAUAGCUUAGGUgUUAAc--- -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 67746 0.71 1
Target:  5'- uGAGUAUAUAGCUUAaGUgUUAAAaGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUcCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 50228 0.81 0.990094
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 130915 0.81 0.993682
Target:  5'- ----uUAUAGCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuuauAUAUCGAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 29611 0.8 0.994613
Target:  5'- -uGUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 167292 0.8 0.99543
Target:  5'- -uGUAUAUAaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 74812 0.8 0.996762
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAaGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 165979 0.8 0.996762
Target:  5'- -uGUAUAUGGCUUAuGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 16058 0.78 0.999193
Target:  5'- uGAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 52205 0.76 0.999856
Target:  5'- aGGUAUAUcaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cUUAUAUAucGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 3108 0.75 0.999955
Target:  5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 163426 0.75 0.999964
Target:  5'- aAAUAUAUAGCUUAGGUgUUAacccuuuaaauccuAAGGc -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAU--------------UUCCc -5'
28286 5' -40.1 NC_005902.1 + 184631 0.72 1
Target:  5'- -cGUAUAUAGCUUAGGggUUAaaAAGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCagAAU--UUCCc -5'
28286 5' -40.1 NC_005902.1 + 100424 0.72 1
Target:  5'- cAGUAUAUAGCUUaAGGg-UUAAAGGa -3'
miRNA:   3'- cUUAUAUAUCGAA-UCCagAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 78118 0.83 0.975629
Target:  5'- aAGUAUAUAGCUUAGaGUUUaUAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUC-CAGA-AUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88323 0.73 0.999998
Target:  5'- aAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCcagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 34756 0.74 0.999988
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAGa-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 76126 1.02 0.304538
Target:  5'- ---cAUAUAGCUUAGGUCUUAAAGGGu -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 77183 0.74 0.999983
Target:  5'- -uAUAUAUAaUUUAGGUgUUGAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 18885 1 0.381251
Target:  5'- aAGUAUAUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgAAUUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.