Results 61 - 80 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 97749 | 0.68 | 1 |
Target: 5'- ---cAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 4814 | 0.68 | 1 |
Target: 5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3' miRNA: 3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5214 | 0.7 | 1 |
Target: 5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3' miRNA: 3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 149878 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 118682 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGU-UAGGggUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 22654 | 0.7 | 1 |
Target: 5'- -cAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 90094 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAaCUUAaGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUcGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 156949 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAGCUUAaauaUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 90276 | 0.71 | 1 |
Target: 5'- uGAAUAUAUAGCUUAaGUgUUAAAaGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUcCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 1450 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAGCUUAaGUgUUAAAGc- -3' miRNA: 3'- -CUUAUAUAUCGAAUcCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 122674 | 0.7 | 1 |
Target: 5'- uGAGUGUAUAGCUUAGaGaUgUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCGAAUC-C-AgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 159782 | 0.7 | 1 |
Target: 5'- aAGUAUAUAGCUaAGua-UUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAaUCcagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 136931 | 0.68 | 1 |
Target: 5'- uGAGUAUAUAGUgUAGGUaUUAAAGuGa -3' miRNA: 3'- -CUUAUAUAUCGaAUCCAgAAUUUC-Cc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 58658 | 0.69 | 1 |
Target: 5'- uGAGUAUAUAGaacaagUA-GUCUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCga----AUcCAGAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 101108 | 0.69 | 1 |
Target: 5'- -uGUAUAUuGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAuCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 165756 | 0.69 | 1 |
Target: 5'- aAGUAUAUGuuaaCUUAGGUgUUAAAGGa -3' miRNA: 3'- cUUAUAUAUc---GAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 139108 | 0.69 | 1 |
Target: 5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUU-UCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157207 | 0.69 | 1 |
Target: 5'- aAAUAUAUAGCUUAGGUaUUAAc--- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 111436 | 0.69 | 1 |
Target: 5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 173499 | 0.7 | 1 |
Target: 5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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