Results 41 - 60 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 44105 | 0.66 | 1 |
Target: 5'- uGAGUAUAUAGUUUAGcUgUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 107830 | 0.66 | 1 |
Target: 5'- -cGUAUAUAGCUUAGaUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 160922 | 0.66 | 1 |
Target: 5'- -uAUAUAUAGCaUAGaGU--UAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUC-CAgaAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 84968 | 0.66 | 1 |
Target: 5'- -cAUAUAUAGUgUAGaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 42558 | 0.66 | 1 |
Target: 5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3' miRNA: 3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157112 | 0.68 | 1 |
Target: 5'- aAGUAUA-AGCuUUAGGaUUUAAAGGGu -3' miRNA: 3'- cUUAUAUaUCG-AAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 114289 | 0.68 | 1 |
Target: 5'- aAGUAUGUAGUgUAGGUgUUAAAaGGu -3' miRNA: 3'- cUUAUAUAUCGaAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 173499 | 0.7 | 1 |
Target: 5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 111436 | 0.69 | 1 |
Target: 5'- -uAUAUAUAGCUUAuauaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 157207 | 0.69 | 1 |
Target: 5'- aAAUAUAUAGCUUAGGUaUUAAc--- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 139108 | 0.69 | 1 |
Target: 5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUU-UCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 165756 | 0.69 | 1 |
Target: 5'- aAGUAUAUGuuaaCUUAGGUgUUAAAGGa -3' miRNA: 3'- cUUAUAUAUc---GAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 101108 | 0.69 | 1 |
Target: 5'- -uGUAUAUuGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAuCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 58658 | 0.69 | 1 |
Target: 5'- uGAGUAUAUAGaacaagUA-GUCUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCga----AUcCAGAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 136931 | 0.68 | 1 |
Target: 5'- uGAGUAUAUAGUgUAGGUaUUAAAGuGa -3' miRNA: 3'- -CUUAUAUAUCGaAUCCAgAAUUUC-Cc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 4814 | 0.68 | 1 |
Target: 5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3' miRNA: 3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 97749 | 0.68 | 1 |
Target: 5'- ---cAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 100020 | 0.68 | 1 |
Target: 5'- ---aAUAUAGCUUAGGUgUUAAu--- -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 116815 | 0.68 | 1 |
Target: 5'- gGAGUAUA---CUUAGGUgUUAAAGGu -3' miRNA: 3'- -CUUAUAUaucGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 149076 | 0.68 | 1 |
Target: 5'- aAGUAUAUAGCUUAGGU---AAAGu- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgaaUUUCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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