miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28287 3' -43.5 NC_005902.1 + 15458 0.68 1
Target:  5'- -aUAUAggUCAGGUGUuACAAGGUuaAUGCUu -3'
miRNA:   3'- ccAUAU--GGUCCAUA-UGUUCCA--UAUGG- -5'
28287 3' -43.5 NC_005902.1 + 52205 0.68 1
Target:  5'- aGGUAUAUCacuuAGGUGUuaaAGGGUgaauaucuuuuGUACCu -3'
miRNA:   3'- -CCAUAUGG----UCCAUAug-UUCCA-----------UAUGG- -5'
28287 3' -43.5 NC_005902.1 + 113109 0.67 1
Target:  5'- aGGUAaGCCAGGUgAUAU-AGGUccuCCu -3'
miRNA:   3'- -CCAUaUGGUCCA-UAUGuUCCAuauGG- -5'
28287 3' -43.5 NC_005902.1 + 169530 0.67 1
Target:  5'- -aUAUAucUCAGGUGUuACAGGGUuaAUGCUu -3'
miRNA:   3'- ccAUAU--GGUCCAUA-UGUUCCA--UAUGG- -5'
28287 3' -43.5 NC_005902.1 + 80776 0.67 1
Target:  5'- gGGUAUAUagcuUAGGUGUuaaAGGGUaaauauccuucauGUACCa -3'
miRNA:   3'- -CCAUAUG----GUCCAUAug-UUCCA-------------UAUGG- -5'
28287 3' -43.5 NC_005902.1 + 73074 0.68 0.999999
Target:  5'- uGUAUACCuGGUAUACcuGGcuuuCCu -3'
miRNA:   3'- cCAUAUGGuCCAUAUGuuCCauauGG- -5'
28287 3' -43.5 NC_005902.1 + 116817 0.69 0.999993
Target:  5'- aGUAUACuUAGGUGUuaAAGGUuaaAUACCc -3'
miRNA:   3'- cCAUAUG-GUCCAUAugUUCCA---UAUGG- -5'
28287 3' -43.5 NC_005902.1 + 72884 0.71 0.999916
Target:  5'- aGGaAUACCAGGaAUACcAGGaggACCa -3'
miRNA:   3'- -CCaUAUGGUCCaUAUGuUCCauaUGG- -5'
28287 3' -43.5 NC_005902.1 + 115607 0.73 0.999237
Target:  5'- aGUAUAaguuCCGGGUGaACAaggugaacacauAGGUGUACCu -3'
miRNA:   3'- cCAUAU----GGUCCAUaUGU------------UCCAUAUGG- -5'
28287 3' -43.5 NC_005902.1 + 73046 0.88 0.678295
Target:  5'- uGGUAUACCucGUAUACcuGGUAUACCu -3'
miRNA:   3'- -CCAUAUGGucCAUAUGuuCCAUAUGG- -5'
28287 3' -43.5 NC_005902.1 + 113001 0.9 0.558459
Target:  5'- aGGUAUACgAGGUAUACcAGGUAcACCa -3'
miRNA:   3'- -CCAUAUGgUCCAUAUGuUCCAUaUGG- -5'
28287 3' -43.5 NC_005902.1 + 112974 1.19 0.019042
Target:  5'- aGGUAUACCAGGUAUACAAGGUAUACCa -3'
miRNA:   3'- -CCAUAUGGUCCAUAUGUUCCAUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.