Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28287 | 5' | -52.3 | NC_005902.1 | + | 113008 | 1.06 | 0.009599 |
Target: 5'- cGAGGUAUACCAGGUACACCAGGUGUUa -3' miRNA: 3'- -CUCCAUAUGGUCCAUGUGGUCCACAA- -5' |
|||||||
28287 | 5' | -52.3 | NC_005902.1 | + | 112973 | 0.78 | 0.49739 |
Target: 5'- cAGGUAUACCAGGUAUacaagguauACCAGGUa-- -3' miRNA: 3'- cUCCAUAUGGUCCAUG---------UGGUCCAcaa -5' |
|||||||
28287 | 5' | -52.3 | NC_005902.1 | + | 113100 | 0.71 | 0.846561 |
Target: 5'- -uGGUAUGaCAGGUAaGCCAGGUGa- -3' miRNA: 3'- cuCCAUAUgGUCCAUgUGGUCCACaa -5' |
|||||||
28287 | 5' | -52.3 | NC_005902.1 | + | 7857 | 0.67 | 0.97594 |
Target: 5'- aGAGG-AUG-CAGGUAUuauAUCAGGUGUUa -3' miRNA: 3'- -CUCCaUAUgGUCCAUG---UGGUCCACAA- -5' |
|||||||
28287 | 5' | -52.3 | NC_005902.1 | + | 72883 | 0.68 | 0.943883 |
Target: 5'- cAGGaAUACCAGGaAUACCAGGa--- -3' miRNA: 3'- cUCCaUAUGGUCCaUGUGGUCCacaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home