miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28287 5' -52.3 NC_005902.1 + 113008 1.06 0.009599
Target:  5'- cGAGGUAUACCAGGUACACCAGGUGUUa -3'
miRNA:   3'- -CUCCAUAUGGUCCAUGUGGUCCACAA- -5'
28287 5' -52.3 NC_005902.1 + 112973 0.78 0.49739
Target:  5'- cAGGUAUACCAGGUAUacaagguauACCAGGUa-- -3'
miRNA:   3'- cUCCAUAUGGUCCAUG---------UGGUCCAcaa -5'
28287 5' -52.3 NC_005902.1 + 113100 0.71 0.846561
Target:  5'- -uGGUAUGaCAGGUAaGCCAGGUGa- -3'
miRNA:   3'- cuCCAUAUgGUCCAUgUGGUCCACaa -5'
28287 5' -52.3 NC_005902.1 + 7857 0.67 0.97594
Target:  5'- aGAGG-AUG-CAGGUAUuauAUCAGGUGUUa -3'
miRNA:   3'- -CUCCaUAUgGUCCAUG---UGGUCCACAA- -5'
28287 5' -52.3 NC_005902.1 + 72883 0.68 0.943883
Target:  5'- cAGGaAUACCAGGaAUACCAGGa--- -3'
miRNA:   3'- cUCCaUAUGGUCCaUGUGGUCCacaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.