miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28288 3' -46 NC_005902.1 + 92528 0.66 0.999992
Target:  5'- uUAACCcCCUGAcuCCUAaaGUGUCa--- -3'
miRNA:   3'- -AUUGGaGGACUuuGGAU--UACAGaucu -5'
28288 3' -46 NC_005902.1 + 76926 0.71 0.995359
Target:  5'- uUAACCUCCUGAAACCcAA-GUUUuuGAa -3'
miRNA:   3'- -AUUGGAGGACUUUGGaUUaCAGAu-CU- -5'
28288 3' -46 NC_005902.1 + 58968 0.71 0.994564
Target:  5'- aAACUUCCUGAGACCUAGU-UUUAa- -3'
miRNA:   3'- aUUGGAGGACUUUGGAUUAcAGAUcu -5'
28288 3' -46 NC_005902.1 + 109064 0.8 0.803341
Target:  5'- uUAACCUCUUGAAACCcAAUGUaUAGAg -3'
miRNA:   3'- -AUUGGAGGACUUUGGaUUACAgAUCU- -5'
28288 3' -46 NC_005902.1 + 127026 1.09 0.029247
Target:  5'- uUAACCUCCUGAAACCUAAUGUCUAGAg -3'
miRNA:   3'- -AUUGGAGGACUUUGGAUUACAGAUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.