miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2829 3' -55.1 NC_001491.2 + 44444 0.66 0.94378
Target:  5'- gGCGGCcuugaaGUGGauuGGGGCaGAGGGGGaGCGg -3'
miRNA:   3'- -UGCUGua----CACU---CCUUG-CUUCCCC-CGC- -5'
2829 3' -55.1 NC_001491.2 + 140259 0.66 0.93124
Target:  5'- gACGGCGaG-GAguccgagcggggacgGGGACGggGGcGGGCGc -3'
miRNA:   3'- -UGCUGUaCaCU---------------CCUUGCuuCC-CCCGC- -5'
2829 3' -55.1 NC_001491.2 + 142622 0.66 0.918227
Target:  5'- cACGGuuauUGAGGGugGggGgGGGGCa -3'
miRNA:   3'- -UGCUguacACUCCUugCuuC-CCCCGc -5'
2829 3' -55.1 NC_001491.2 + 80755 0.67 0.893489
Target:  5'- cCGAaaaaGUGGGGAACu--GGGGGCa -3'
miRNA:   3'- uGCUgua-CACUCCUUGcuuCCCCCGc -5'
2829 3' -55.1 NC_001491.2 + 142570 0.68 0.872515
Target:  5'- cAUGGCuggguuacgGUGUGcGGcuAugGggGGGGGCGc -3'
miRNA:   3'- -UGCUG---------UACACuCC--UugCuuCCCCCGC- -5'
2829 3' -55.1 NC_001491.2 + 119464 0.68 0.840736
Target:  5'- aACGACAcacggguucuaauUGguuGGAGCGggGGGGagGCGa -3'
miRNA:   3'- -UGCUGU-------------ACacuCCUUGCuuCCCC--CGC- -5'
2829 3' -55.1 NC_001491.2 + 121499 0.69 0.8163
Target:  5'- gGCGAgGggGUcAGGGACGGgaugAGGGGGCu -3'
miRNA:   3'- -UGCUgUa-CAcUCCUUGCU----UCCCCCGc -5'
2829 3' -55.1 NC_001491.2 + 54604 0.7 0.780321
Target:  5'- gGCGGCAgcgGcGGGGGAUGGu-GGGGCGg -3'
miRNA:   3'- -UGCUGUa--CaCUCCUUGCUucCCCCGC- -5'
2829 3' -55.1 NC_001491.2 + 31981 0.74 0.559815
Target:  5'- aGCGcCAUcaGAGGAACGGAGGGaGCGg -3'
miRNA:   3'- -UGCuGUAcaCUCCUUGCUUCCCcCGC- -5'
2829 3' -55.1 NC_001491.2 + 138094 0.78 0.327913
Target:  5'- uGCGGCGaagGUGGGGGccaagACGAGGuGGGGCGg -3'
miRNA:   3'- -UGCUGUa--CACUCCU-----UGCUUC-CCCCGC- -5'
2829 3' -55.1 NC_001491.2 + 114000 1.08 0.004092
Target:  5'- gACGACAUGUGAGGAACGAAGGGGGCGu -3'
miRNA:   3'- -UGCUGUACACUCCUUGCUUCCCCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.