miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 29201 0.66 1
Target:  5'- uUAAUCUUUUAACucuUUaacaccUAAGCUaUAUAUg -3'
miRNA:   3'- -AUUAGAAAAUUGu--AA------AUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 108901 0.66 1
Target:  5'- ---cCUUUUAACAgcUAGGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 165946 0.66 1
Target:  5'- ---cCUUUUAAUAcUUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 103990 0.66 1
Target:  5'- -----aUUUAAUAUUUAAGCUaUAUAUu -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 14820 0.66 1
Target:  5'- ------aUUAACAUUUAAGCUg---- -3'
miRNA:   3'- auuagaaAAUUGUAAAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 155549 0.67 1
Target:  5'- uUGAUCUgu--AUAUUUAGGgUUAUAUa -3'
miRNA:   3'- -AUUAGAaaauUGUAAAUUCgAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 111230 0.67 1
Target:  5'- ---cCUUUUAACAccUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36800 0.67 1
Target:  5'- ---cCUUUUAACAcUUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 135985 0.67 1
Target:  5'- uUAAUCUUUUAACAccUAAGUaUAUu- -3'
miRNA:   3'- -AUUAGAAAAUUGUaaAUUCGaAUAua -5'
28290 3' -33.5 NC_005902.1 + 122900 0.68 1
Target:  5'- -cAUCUUUUAACAUcUAAGUgaUAUAc -3'
miRNA:   3'- auUAGAAAAUUGUAaAUUCGa-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 77101 0.68 1
Target:  5'- -------cUAACAcUUAAGCUUAUAUa -3'
miRNA:   3'- auuagaaaAUUGUaAAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 140686 0.68 1
Target:  5'- --cUCUUUUAACAUccAAGCU-AUAa -3'
miRNA:   3'- auuAGAAAAUUGUAaaUUCGAaUAUa -5'
28290 3' -33.5 NC_005902.1 + 137434 0.68 1
Target:  5'- ---cCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 73647 0.68 1
Target:  5'- --cUC-UUUAAUAUUUAaAGCUUAUAUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAU-UCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 16888 0.68 1
Target:  5'- ---aCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 131060 0.69 1
Target:  5'- ---aCUUUUuaAACAUUUAAGCaUAUAUu -3'
miRNA:   3'- auuaGAAAA--UUGUAAAUUCGaAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 68934 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 51674 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 118294 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 118517 0.69 1
Target:  5'- aGAUUUUUUAAUcUUUGAGCU-AUAUa -3'
miRNA:   3'- aUUAGAAAAUUGuAAAUUCGAaUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.