miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 148237 1.08 0.581082
Target:  5'- uUAAUCUUUUAACAUUUAAGCUUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUAAAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 125532 0.71 1
Target:  5'- cAGUUUUaaaaaagUUAACAUUUAAGCUaUAUAUa -3'
miRNA:   3'- aUUAGAA-------AAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 12737 0.71 1
Target:  5'- --cUCUUUUAACcccauAGCUUAUAUa -3'
miRNA:   3'- auuAGAAAAUUGuaaauUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 103990 0.66 1
Target:  5'- -----aUUUAAUAUUUAAGCUaUAUAUu -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 92156 0.77 1
Target:  5'- uUAAUCUUUUAACAacUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 29086 0.76 1
Target:  5'- uUAAUCcUUUAAUAUUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 134157 0.74 1
Target:  5'- uUAGUCaUUUAACAUcUAAGCUaUAUAUa -3'
miRNA:   3'- -AUUAGaAAAUUGUAaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 48250 0.73 1
Target:  5'- uUAAUCcUUUAACAcUUAAGCUaUAUAUa -3'
miRNA:   3'- -AUUAGaAAAUUGUaAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 174460 0.72 1
Target:  5'- uUAAUCUUUUuACAUcUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAuUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 141995 0.71 1
Target:  5'- --cUC-UUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 33078 0.72 1
Target:  5'- uUAAUCUUUUAAauccuaAGGCUUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUguaaa-UUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 163388 0.73 1
Target:  5'- ---cCUUUUAACAUcUAAGCUaUAUAUg -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162018 0.81 1
Target:  5'- -cAUCUUUUAAUAUUUAAGCaUAUAc -3'
miRNA:   3'- auUAGAAAAUUGUAAAUUCGaAUAUa -5'
28290 3' -33.5 NC_005902.1 + 154913 0.72 1
Target:  5'- -cAUCUUUUAACAUccAAGCU-AUAUa -3'
miRNA:   3'- auUAGAAAAUUGUAaaUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 41019 0.77 1
Target:  5'- aUAAUCUUUUAAUAcUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36163 0.73 1
Target:  5'- ---cCUUUUAACAUcUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 40672 0.71 1
Target:  5'- -----cUUUAACGUUUAAGCUaUAUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 8169 0.71 1
Target:  5'- uUAAUCc--UAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGaaaAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 156339 0.77 1
Target:  5'- ---cUUUUUAACAUUUAAGCUaUAUAUg -3'
miRNA:   3'- auuaGAAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 4196 0.75 1
Target:  5'- ---cCUUUUAAUAUUUAAGCUaUAUAa -3'
miRNA:   3'- auuaGAAAAUUGUAAAUUCGA-AUAUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.