miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 16888 0.68 1
Target:  5'- ---aCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 140686 0.68 1
Target:  5'- --cUCUUUUAACAUccAAGCU-AUAa -3'
miRNA:   3'- auuAGAAAAUUGUAaaUUCGAaUAUa -5'
28290 3' -33.5 NC_005902.1 + 77101 0.68 1
Target:  5'- -------cUAACAcUUAAGCUUAUAUa -3'
miRNA:   3'- auuagaaaAUUGUaAAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36800 0.67 1
Target:  5'- ---cCUUUUAACAcUUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 111230 0.67 1
Target:  5'- ---cCUUUUAACAccUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 15150 0.7 1
Target:  5'- ---cCUUUUAACAUgUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162750 0.71 1
Target:  5'- -uAUCccUUUAACAUUUAAGCU-AUAUg -3'
miRNA:   3'- auUAGa-AAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 41019 0.77 1
Target:  5'- aUAAUCUUUUAAUAcUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162018 0.81 1
Target:  5'- -cAUCUUUUAAUAUUUAAGCaUAUAc -3'
miRNA:   3'- auUAGAAAAUUGUAAAUUCGaAUAUa -5'
28290 3' -33.5 NC_005902.1 + 103990 0.66 1
Target:  5'- -----aUUUAAUAUUUAAGCUaUAUAUu -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 159498 0.81 1
Target:  5'- aUAAUCUuaacccUUUAACAUUUAAGCUauUAUAUa -3'
miRNA:   3'- -AUUAGA------AAAUUGUAAAUUCGA--AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 116669 0.78 1
Target:  5'- cAAUUUUUUAACAccugAAGCUUAUAUa -3'
miRNA:   3'- aUUAGAAAAUUGUaaa-UUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 159737 0.75 1
Target:  5'- uUAAUCUUUUAAUAccUAAGCUaUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 37767 0.74 1
Target:  5'- -uAUCUUUUAACAccUAAGCUUGc-- -3'
miRNA:   3'- auUAGAAAAUUGUaaAUUCGAAUaua -5'
28290 3' -33.5 NC_005902.1 + 180617 0.74 1
Target:  5'- uUAAUUcUUUAACAccUAAGCUUAUAUg -3'
miRNA:   3'- -AUUAGaAAAUUGUaaAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 23833 0.73 1
Target:  5'- -----aUUUAACAUUUAAGCUaUAUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 72394 0.73 1
Target:  5'- -uAUCuUUUUAAUAUUUAAGCUaAUAUa -3'
miRNA:   3'- auUAG-AAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 28152 0.72 1
Target:  5'- -uAUCUUUUAACAccUAAGCUaUAUAa -3'
miRNA:   3'- auUAGAAAAUUGUaaAUUCGA-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 81049 0.72 1
Target:  5'- aAAUUUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- aUUAGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 135892 0.71 1
Target:  5'- --cUC-UUUAACAUUUAAGC-UAUGUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGaAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.