miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 154584 1.11 0.029302
Target:  5'- aACCCUUUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 104092 1 0.122463
Target:  5'- aACCCUUUACUUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 136044 0.99 0.140953
Target:  5'- aACCCUUUAacuCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 120244 0.98 0.153243
Target:  5'- aACCCUUUaacACCUGAGCUAUAUGCUCAUg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23255 0.97 0.180769
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 99555 0.97 0.185762
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 143772 0.97 0.190877
Target:  5'- uACCCUUUaacACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 76084 0.96 0.206968
Target:  5'- aACCCUUUaagACCUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 169982 0.96 0.206968
Target:  5'- aACCCUUUAUCUAAGCUAUAUAUUCAUu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 71602 0.95 0.224219
Target:  5'- aAUCCUUUaacACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 119007 0.95 0.242676
Target:  5'- uACCCUUUAacuCCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 40966 0.94 0.262379
Target:  5'- cACCCUUuaaUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUA--UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 179809 0.92 0.329267
Target:  5'- aACCCUUUAacaaCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 63235 0.92 0.329267
Target:  5'- uACCCUUUAaccCCUAAGCUAUAUACUCGg -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 34813 0.91 0.345742
Target:  5'- aACCCUUUaacACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 145944 0.91 0.362799
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 143017 0.91 0.362799
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 97719 0.91 0.371544
Target:  5'- uACCCUUUAUCUAAGCUAUAUAUUUAUu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 51671 0.9 0.407933
Target:  5'- aACCCUUUuaacACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA----UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 156546 0.9 0.407933
Target:  5'- uACCCUUUuaacACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- -UGGGAAA----UGGAUUCGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.