miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 154584 1.11 0.029302
Target:  5'- aACCCUUUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 167155 0.87 0.550664
Target:  5'- uCCCUUUaacACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 136567 0.87 0.561553
Target:  5'- aACCCUUUaacACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 163446 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAAgGCUAUAUAa---- -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAUAUAUgagug -5'
28291 3' -44.8 NC_005902.1 + 99555 0.97 0.185762
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 40966 0.94 0.262379
Target:  5'- cACCCUUuaaUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUA--UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 143017 0.91 0.362799
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 145944 0.91 0.362799
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 95943 0.89 0.426945
Target:  5'- uACCCUUUaacACUUAAGUUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 5647 0.87 0.539841
Target:  5'- aACCCUUUAacaaUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 128771 0.88 0.486954
Target:  5'- uACCCUUUaacACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 25011 0.89 0.426945
Target:  5'- aACUCUUUAUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 104092 1 0.122463
Target:  5'- aACCCUUUACUUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 162389 0.88 0.497347
Target:  5'- uCCCUUUaacACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUaUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 136044 0.99 0.140953
Target:  5'- aACCCUUUAacuCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 45077 0.9 0.407933
Target:  5'- uACCUUUUaacACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 50042 0.87 0.518421
Target:  5'- uACCCUUUaacACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUA-----------UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 48378 0.87 0.561553
Target:  5'- aACCCUUUaacACCUAAGUUAUGUACUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23255 0.97 0.180769
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 34813 0.91 0.345742
Target:  5'- aACCCUUUaacACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.