miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 137432 0.67 0.999995
Target:  5'- cACCUUUUaacAUCUAAGCUAUAcACUgAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUaUGAgUG- -5'
28291 3' -44.8 NC_005902.1 + 12541 0.67 0.999995
Target:  5'- aACCCUUuaaUACCUAAaUUAUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUcGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 107135 0.67 0.999994
Target:  5'- aACCUUUUAuccacccUCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -UGGGAAAU-------GGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 54348 0.67 0.999992
Target:  5'- ------cACCUAAGCUAUAUauauGCUCAUu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUA----UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 74604 0.67 0.999992
Target:  5'- uACCCUUUAauauaUAAGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAAAUgg---AUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 114810 0.67 0.999992
Target:  5'- uACCCUUUaacACUUAGGUUAUAUAUg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 69370 0.67 0.999989
Target:  5'- uACCgUUUaacACCUAAaCUAUAUGCUUAUu -3'
miRNA:   3'- -UGGgAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 3083 0.67 0.999989
Target:  5'- ------cACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 67704 0.67 0.999984
Target:  5'- aACCUUUUAacuCCUAGGCUAUAUAg---- -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUgagug -5'
28291 3' -44.8 NC_005902.1 + 135890 0.67 0.999984
Target:  5'- aACUCUUUaacAUUUAAGCUAUGUACaaacaagCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 16875 0.68 0.999978
Target:  5'- uAUCCUUUaacACCUAAGCUAUA---UCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUaugAGUg -5'
28291 3' -44.8 NC_005902.1 + 45213 0.68 0.999978
Target:  5'- uCCCaaUACuuCUAAGUUAUAUACUCGu -3'
miRNA:   3'- uGGGaaAUG--GAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 162752 0.68 0.999978
Target:  5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 37767 0.68 0.99997
Target:  5'- uAUCUUUUaacACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 1260 0.68 0.99997
Target:  5'- aACUCUUcaacACCUAGGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAAa---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 118518 0.68 0.999959
Target:  5'- gAUuuUUUAaucUUUGAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGggAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 133833 0.68 0.999959
Target:  5'- cACCCUUUaacACCUAAGUgaUAUAccuguuUGCUUAUg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCG--AUAU------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 16513 0.68 0.999945
Target:  5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3'
miRNA:   3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 159739 0.68 0.999945
Target:  5'- aAUCUUUuaaUACCUAAGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 3434 0.68 0.99994
Target:  5'- aACCCUUUAaaaaCUAAGCcuuauauuuguuuguUAUGCUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGau-------------AUAUGAGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.