Results 21 - 40 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 3' | -44.8 | NC_005902.1 | + | 137432 | 0.67 | 0.999995 |
Target: 5'- cACCUUUUaacAUCUAAGCUAUAcACUgAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUaUGAgUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 12541 | 0.67 | 0.999995 |
Target: 5'- aACCCUUuaaUACCUAAaUUAUAUACaaACa -3' miRNA: 3'- -UGGGAA---AUGGAUUcGAUAUAUGagUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 107135 | 0.67 | 0.999994 |
Target: 5'- aACCUUUUAuccacccUCUAAGCUAUAUAUaaACa -3' miRNA: 3'- -UGGGAAAU-------GGAUUCGAUAUAUGagUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 54348 | 0.67 | 0.999992 |
Target: 5'- ------cACCUAAGCUAUAUauauGCUCAUu -3' miRNA: 3'- ugggaaaUGGAUUCGAUAUA----UGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 74604 | 0.67 | 0.999992 |
Target: 5'- uACCCUUUAauauaUAAGCUAUAUAUa--- -3' miRNA: 3'- -UGGGAAAUgg---AUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 114810 | 0.67 | 0.999992 |
Target: 5'- uACCCUUUaacACUUAGGUUAUAUAUg--- -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 69370 | 0.67 | 0.999989 |
Target: 5'- uACCgUUUaacACCUAAaCUAUAUGCUUAUu -3' miRNA: 3'- -UGGgAAA---UGGAUUcGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 3083 | 0.67 | 0.999989 |
Target: 5'- ------cACCUAAGCUAUAUAUaCACu -3' miRNA: 3'- ugggaaaUGGAUUCGAUAUAUGaGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 67704 | 0.67 | 0.999984 |
Target: 5'- aACCUUUUAacuCCUAGGCUAUAUAg---- -3' miRNA: 3'- -UGGGAAAU---GGAUUCGAUAUAUgagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 135890 | 0.67 | 0.999984 |
Target: 5'- aACUCUUUaacAUUUAAGCUAUGUACaaacaagCACa -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 16875 | 0.68 | 0.999978 |
Target: 5'- uAUCCUUUaacACCUAAGCUAUA---UCAa -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUaugAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 45213 | 0.68 | 0.999978 |
Target: 5'- uCCCaaUACuuCUAAGUUAUAUACUCGu -3' miRNA: 3'- uGGGaaAUG--GAUUCGAUAUAUGAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 162752 | 0.68 | 0.999978 |
Target: 5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3' miRNA: 3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 37767 | 0.68 | 0.99997 |
Target: 5'- uAUCUUUUaacACCUAAGCUugcUAUGCUUAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 1260 | 0.68 | 0.99997 |
Target: 5'- aACUCUUcaacACCUAGGCUAUAUAUa--- -3' miRNA: 3'- -UGGGAAa---UGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 118518 | 0.68 | 0.999959 |
Target: 5'- gAUuuUUUAaucUUUGAGCUAUAUACUCAUu -3' miRNA: 3'- -UGggAAAU---GGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 133833 | 0.68 | 0.999959 |
Target: 5'- cACCCUUUaacACCUAAGUgaUAUAccuguuUGCUUAUg -3' miRNA: 3'- -UGGGAAA---UGGAUUCG--AUAU------AUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 16513 | 0.68 | 0.999945 |
Target: 5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3' miRNA: 3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 159739 | 0.68 | 0.999945 |
Target: 5'- aAUCUUUuaaUACCUAAGCUAUAUAUa--- -3' miRNA: 3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 3434 | 0.68 | 0.99994 |
Target: 5'- aACCCUUUAaaaaCUAAGCcuuauauuuguuuguUAUGCUCAUu -3' miRNA: 3'- -UGGGAAAUg---GAUUCGau-------------AUAUGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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