miRNA display CGI


Results 101 - 120 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 88567 0.7 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54343 0.7 1
Target:  5'- -----aUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 90418 0.7 1
Target:  5'- aUAUCacUUUAACAUCUAAGUgUAUAUAUa -3'
miRNA:   3'- -GUAGa-AAAUUGUAGGUUCG-AUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146672 0.7 1
Target:  5'- --cCUUUUAAaAUCUAAGgUGUAUACa -3'
miRNA:   3'- guaGAAAAUUgUAGGUUCgAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 169126 0.7 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 160882 0.7 1
Target:  5'- ----aUUUAACccCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 114358 0.71 1
Target:  5'- ------cUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 46935 0.71 1
Target:  5'- --cCUgUUAAUAcCUAAGCUAUAUGCa -3'
miRNA:   3'- guaGAaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 31419 0.71 1
Target:  5'- ----cUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 40970 0.71 1
Target:  5'- ----cUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 130885 0.71 1
Target:  5'- ----cUUUAAC-UCuCAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAG-GUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 97178 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 52773 0.71 1
Target:  5'- --cCUUUUAACAcCUAAGUUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 71209 0.71 1
Target:  5'- --cCUUUUAAUGcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172818 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 49955 0.71 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 60469 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81834 0.71 1
Target:  5'- aAUCccUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- gUAGa-AAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 50213 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 184864 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUGUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.