miRNA display CGI


Results 121 - 140 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 52773 0.71 1
Target:  5'- --cCUUUUAACAcCUAAGUUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 130885 0.71 1
Target:  5'- ----cUUUAAC-UCuCAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAG-GUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 49955 0.71 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 97178 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 86441 0.72 1
Target:  5'- aAUUcUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67706 0.72 1
Target:  5'- --cCUUUUAAC-UCCuAGGCUAUAUAg -3'
miRNA:   3'- guaGAAAAUUGuAGG-UUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 48252 0.72 1
Target:  5'- aAUCcUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 78858 0.72 1
Target:  5'- --cCUUUUAACccUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 159500 0.72 1
Target:  5'- aAUCUuaacccUUUAACAUUUAAGCUAuuaUAUACu -3'
miRNA:   3'- gUAGA------AAAUUGUAGGUUCGAU---AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 109218 0.72 1
Target:  5'- --aUUUUUAAaggauUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUU-----GUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 180349 0.72 1
Target:  5'- aAUUcUUUAACccCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 25013 0.72 1
Target:  5'- -cUCUU----UAUCUAAGCUAUAUACu -3'
miRNA:   3'- guAGAAaauuGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 3077 0.72 1
Target:  5'- ----aUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 147589 0.72 1
Target:  5'- aAUCcugUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1711 0.72 1
Target:  5'- -uUC-UUUAAUAUCUAAGCUAUAUu- -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAug -5'
28292 3' -38.8 NC_005902.1 + 93841 0.72 1
Target:  5'- ----aUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136893 0.72 1
Target:  5'- ----aUUUAACAcCCAAGUUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156786 0.72 1
Target:  5'- aAUCc--UAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 95764 0.73 1
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23420 0.73 1
Target:  5'- --------cACAUUCAAGCUAUAUACu -3'
miRNA:   3'- guagaaaauUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.