miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 31088 0.8 0.999099
Target:  5'- --cCUUUUAACAcCCAAGCUAUGaACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 76870 0.8 0.9983
Target:  5'- aAUUcUUUAAUAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 111230 0.8 0.9983
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23414 0.8 0.998879
Target:  5'- -----gUUAACAcCCAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 43526 0.8 0.998879
Target:  5'- --cCUUUUAACAUCUAAcCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116632 0.8 0.998879
Target:  5'- --cUUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51424 0.8 0.999099
Target:  5'- -----gUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 69185 0.8 0.999099
Target:  5'- ----cUUUAACAUCUAAGCUAUAUGa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 165714 0.8 0.998879
Target:  5'- uUAUCUaUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- -GUAGAaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29612 0.8 0.999099
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149198 0.8 0.998615
Target:  5'- aAUUUUUUAAUAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156339 0.8 0.998615
Target:  5'- --cUUUUUAACAUUUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68934 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54048 0.79 0.99965
Target:  5'- aUAUCcUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 95570 0.79 0.999641
Target:  5'- gAUCUUucaguuuuaaaagUUAACAUCUAAGUUAUAUAUa -3'
miRNA:   3'- gUAGAA-------------AAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118435 0.79 0.99943
Target:  5'- --gCUUUcAACAUCUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAaUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 160997 0.79 0.99965
Target:  5'- ------gUAAUAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaaAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156549 0.79 0.999552
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118649 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 182565 0.79 0.999552
Target:  5'- ---aUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.