miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 100672 0.78 0.999729
Target:  5'- ----cUUUAAUAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 37766 0.78 0.999729
Target:  5'- uUAUCUUUUAACAcCUAAGCUugcUAUGCu -3'
miRNA:   3'- -GUAGAAAAUUGUaGGUUCGAu--AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 75900 0.78 0.999792
Target:  5'- uUAUCcUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118294 0.78 0.999792
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51674 0.78 0.999792
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 167152 0.78 0.999842
Target:  5'- -uUCUcccUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guAGA---AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174577 0.78 0.99987
Target:  5'- uGUCUUugauagugaccgagUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- gUAGAA--------------AAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 4196 0.78 0.99988
Target:  5'- --cCUUUUAAUAUUUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 133675 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143643 0.77 0.999911
Target:  5'- --cCUUUUAACAUCUAAGUUAUAa-- -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 170851 0.77 0.999911
Target:  5'- ----cUUUAACAUgUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 80735 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 39097 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 86391 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 26490 0.77 0.999934
Target:  5'- aAUCU--UAACAUCUAAacuGCUAUAUACa -3'
miRNA:   3'- gUAGAaaAUUGUAGGUU---CGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23833 0.77 0.999951
Target:  5'- ----aUUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 41980 0.77 0.999951
Target:  5'- aAUUgUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 8171 0.77 0.999965
Target:  5'- aAUCc--UAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 165890 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 157231 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.