miRNA display CGI


Results 101 - 120 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 142155 0.76 0.999982
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 91860 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 169122 0.76 0.999982
Target:  5'- uUAUUcUUUAACAUUUAAGCUAUAUAg -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 42238 0.76 0.999982
Target:  5'- --cCUcUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 157231 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 165890 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 6000 0.76 0.999987
Target:  5'- -cUCUUUUAACAaCCGAGCUGUu--- -3'
miRNA:   3'- guAGAAAAUUGUaGGUUCGAUAuaug -5'
28292 3' -38.8 NC_005902.1 + 113600 0.76 0.999991
Target:  5'- uUAUCcUUUAAUAUCUAAGC-AUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 163512 0.76 0.999991
Target:  5'- -----aUUAACAUCUAAGCUAUAaACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 104715 0.76 0.999991
Target:  5'- uUAUCcUUUAACuUUUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 40672 0.75 0.999994
Target:  5'- ----cUUUAACGUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137774 0.75 0.999994
Target:  5'- --cUUUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 127778 0.75 0.999994
Target:  5'- --cCUUUUAACAcUgAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGgUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 124390 0.75 0.999996
Target:  5'- -cUC-UUUAACAUCUAAGCUAUAc-- -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 1403 0.75 0.999996
Target:  5'- gCGUCaccuUUUUAACccCUAAGCUAUAUACg -3'
miRNA:   3'- -GUAG----AAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23313 0.75 0.999996
Target:  5'- ------aUAACAUCUAAGCUAUAUGu -3'
miRNA:   3'- guagaaaAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 71324 0.75 0.999996
Target:  5'- -----gUUAACAUCUAAGUUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162605 0.75 0.999997
Target:  5'- --------cACAUUCAAGCUAUAUACa -3'
miRNA:   3'- guagaaaauUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 179813 0.75 0.999997
Target:  5'- ----cUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143776 0.75 0.999997
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.