miRNA display CGI


Results 121 - 140 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 128775 0.75 0.999997
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162605 0.75 0.999997
Target:  5'- --------cACAUUCAAGCUAUAUACa -3'
miRNA:   3'- guagaaaauUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 147755 0.75 0.999998
Target:  5'- ----cUUUAACAUCUAAGCUAUAa-- -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 29203 0.75 0.999998
Target:  5'- aAUCUUUUAACucuuuaacacCUAAGCUAUAUAUg -3'
miRNA:   3'- gUAGAAAAUUGua--------GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 99623 0.75 0.999998
Target:  5'- -----aUUAACAUUUAAGCUGUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 125545 0.74 0.999999
Target:  5'- -----gUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 88298 0.74 0.999999
Target:  5'- -----aUUAACAcCUAAGCUAUAUGCa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 38412 0.74 0.999999
Target:  5'- -----aUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 151286 0.74 0.999999
Target:  5'- aAUCU--UAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGAaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 182934 0.74 0.999999
Target:  5'- ---aUUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 72393 0.74 0.999999
Target:  5'- uUAUCuUUUUAAUAUUUAAGCUaAUAUACa -3'
miRNA:   3'- -GUAG-AAAAUUGUAGGUUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 94700 0.74 0.999999
Target:  5'- aAUCU--UAAUAcCUAAGCUAUGUACa -3'
miRNA:   3'- gUAGAaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71198 0.74 0.999999
Target:  5'- --cUUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 133624 0.68 1
Target:  5'- -----gUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 45314 0.66 1
Target:  5'- aGUUgggUUAAaAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaa-AAUUgUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81834 0.71 1
Target:  5'- aAUCccUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- gUAGa-AAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 172818 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 111387 0.67 1
Target:  5'- aUAUCgcUUUAACAccacCUAAGUUAUAUACu -3'
miRNA:   3'- -GUAGa-AAAUUGUa---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 60469 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 49955 0.71 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.