miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 48508 0.68 1
Target:  5'- -----gUUAAUAUCUAAGCcAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 49955 0.71 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 50213 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 50822 0.7 1
Target:  5'- ----cUUUAACAUCUAAaCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51424 0.8 0.999099
Target:  5'- -----gUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51674 0.78 0.999792
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51852 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 52773 0.71 1
Target:  5'- --cCUUUUAACAcCUAAGUUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 54048 0.79 0.99965
Target:  5'- aUAUCcUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54343 0.7 1
Target:  5'- -----aUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54889 0.69 1
Target:  5'- -----cUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 57237 0.66 1
Target:  5'- -cUC-UUUAACAUCUuAGCUGUGa-- -3'
miRNA:   3'- guAGaAAAUUGUAGGuUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 58397 0.69 1
Target:  5'- aUAUUUUUUAACAUUUAuaCUAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUucGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 58536 0.66 1
Target:  5'- ----cUUUAACAcUgAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGgUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 60469 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 61623 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 61676 0.67 1
Target:  5'- -----gUUAAUAUCUAAGCUAUAc-- -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 63239 0.69 1
Target:  5'- ----cUUUAACccCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 63364 0.68 1
Target:  5'- -cUC-UUUAACAUCUcuAAGCUAUAcACu -3'
miRNA:   3'- guAGaAAAUUGUAGG--UUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 66389 0.67 1
Target:  5'- cCAUCUUUUAcaAUAgaugauauuucuuuUCCuAGUUGUGUACa -3'
miRNA:   3'- -GUAGAAAAU--UGU--------------AGGuUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.