miRNA display CGI


Results 101 - 120 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 67360 0.68 1
Target:  5'- --cCUUUUAACAaCUAAGUUAgAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUaUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67590 0.66 1
Target:  5'- -----gUUAACAUCUAAGCUcauuUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAu---AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67706 0.72 1
Target:  5'- --cCUUUUAAC-UCCuAGGCUAUAUAg -3'
miRNA:   3'- guaGAAAAUUGuAGG-UUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 68280 0.76 0.999982
Target:  5'- uUAUCUUUUAAC-UCCuAAGCcAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGuAGG-UUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68934 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 69065 0.66 1
Target:  5'- uUAUUUgUUAACAcCUAAGCUuaAUAUGCu -3'
miRNA:   3'- -GUAGAaAAUUGUaGGUUCGA--UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 69185 0.8 0.999099
Target:  5'- ----cUUUAACAUCUAAGCUAUAUGa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 71198 0.74 0.999999
Target:  5'- --cUUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71209 0.71 1
Target:  5'- --cCUUUUAAUGcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71324 0.75 0.999996
Target:  5'- -----gUUAACAUCUAAGUUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71602 0.81 0.996972
Target:  5'- aAUCcUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 72393 0.74 0.999999
Target:  5'- uUAUCuUUUUAAUAUUUAAGCUaAUAUACa -3'
miRNA:   3'- -GUAG-AAAAUUGUAGGUUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 75900 0.78 0.999792
Target:  5'- uUAUCcUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76204 0.68 1
Target:  5'- ---aUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76658 0.67 1
Target:  5'- ----cUUUAACAUCUAAGUUugcUAUGCu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAu--AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76770 0.7 1
Target:  5'- --aUUUUUAaaggauuACAUUUAGGCUAUAUACa -3'
miRNA:   3'- guaGAAAAU-------UGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76870 0.8 0.9983
Target:  5'- aAUUcUUUAAUAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 78211 0.89 0.878473
Target:  5'- -uUC-UUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 78858 0.72 1
Target:  5'- --cCUUUUAACccUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 80735 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.