miRNA display CGI


Results 121 - 140 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 81050 0.84 0.983352
Target:  5'- aAUUUUUUAACAUCUAAGCUAUAc-- -3'
miRNA:   3'- gUAGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 81285 0.86 0.962445
Target:  5'- -----gUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81834 0.71 1
Target:  5'- aAUCccUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- gUAGa-AAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 84446 0.67 1
Target:  5'- -------gAugGUCC-AGCUAUAUGCa -3'
miRNA:   3'- guagaaaaUugUAGGuUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85055 0.9 0.87023
Target:  5'- --cUUUUUAACAUCUAGGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85343 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85614 0.73 1
Target:  5'- uCAUCcUUUAACccUUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85908 0.83 0.988926
Target:  5'- ----cUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 86391 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 86441 0.72 1
Target:  5'- aAUUcUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 87126 0.69 1
Target:  5'- -----gUUAAUAUUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 88298 0.74 0.999999
Target:  5'- -----aUUAACAcCUAAGCUAUAUGCa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 88567 0.7 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 90061 0.68 1
Target:  5'- -----cUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 90418 0.7 1
Target:  5'- aUAUCacUUUAACAUCUAAGUgUAUAUAUa -3'
miRNA:   3'- -GUAGa-AAAUUGUAGGUUCG-AUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 91860 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 92158 0.92 0.795139
Target:  5'- aAUCUUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 93841 0.72 1
Target:  5'- ----aUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 93988 0.86 0.966205
Target:  5'- --aCUUUUuaAACAUCUAAGCUAUGUACu -3'
miRNA:   3'- guaGAAAA--UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 94700 0.74 0.999999
Target:  5'- aAUCU--UAAUAcCUAAGCUAUGUACa -3'
miRNA:   3'- gUAGAaaAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.