miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 146731 0.83 0.990418
Target:  5'- gUAUCcUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146672 0.7 1
Target:  5'- --cCUUUUAAaAUCUAAGgUGUAUACa -3'
miRNA:   3'- guaGAAAAUUgUAGGUUCgAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146586 0.82 0.992927
Target:  5'- gUAUCcauucUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaaa--AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146425 0.69 1
Target:  5'- aAUCcUUUAACAcCUAAGCUAUAa-- -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 145948 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 145338 0.73 1
Target:  5'- -cUCUU----UAUCUAAGCUAUAUACa -3'
miRNA:   3'- guAGAAaauuGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 145043 0.7 1
Target:  5'- uUAUUcUUUAGCAcCUAAGCUAUAUGu -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 144983 0.67 1
Target:  5'- aAUCcUUUAAUAcuaAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaggUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143776 0.75 0.999997
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143645 0.73 1
Target:  5'- -----aUUGACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143643 0.77 0.999911
Target:  5'- --cCUUUUAACAUCUAAGUUAUAa-- -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 143021 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 142155 0.76 0.999982
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 142148 0.66 1
Target:  5'- --cUUUUUAAcCAUCUAuuuaAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUU-GUAGGU----UCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 141995 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140920 0.73 1
Target:  5'- aAUCa--UAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140865 0.89 0.886433
Target:  5'- uUAUUcUUUAACAUCUAAGCUGUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140686 0.94 0.707982
Target:  5'- -cUCUUUUAACAUCCAAGCUAUAa-- -3'
miRNA:   3'- guAGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 140050 0.69 1
Target:  5'- uCAUCaUUUAAUAcUUAAGCUAUAUAUu -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 138766 0.81 0.996373
Target:  5'- aAUCUcaacacaAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAaaa----UUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.