miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 137900 0.81 0.996972
Target:  5'- -----gUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137774 0.75 0.999994
Target:  5'- --cUUUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137754 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137434 0.85 0.972912
Target:  5'- --cCUUUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 136893 0.72 1
Target:  5'- ----aUUUAACAcCCAAGUUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136571 0.69 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136237 0.68 1
Target:  5'- aAUUcUUUAAUAcCCAAGUUAUAUAUg -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136048 0.7 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 135951 0.7 1
Target:  5'- gAUCaaagggUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGaa----AAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 135892 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 135813 0.73 1
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134581 0.81 0.997487
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134329 0.68 1
Target:  5'- ----cUUUAACAUUUAAGC-AUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134159 0.9 0.843877
Target:  5'- aGUCaUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134040 0.67 1
Target:  5'- aUAUCUacauaUUAAC-UCCuAAGUUAUAUACa -3'
miRNA:   3'- -GUAGAa----AAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 133675 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 133624 0.68 1
Target:  5'- -----gUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 131667 0.66 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 130953 0.66 1
Target:  5'- aAUCcUUUAAUAcUUAAGUUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 130885 0.71 1
Target:  5'- ----cUUUAAC-UCuCAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAG-GUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.