miRNA display CGI


Results 101 - 120 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 128775 0.75 0.999997
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 127778 0.75 0.999994
Target:  5'- --cCUUUUAACAcUgAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGgUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 127527 0.66 1
Target:  5'- aGUCUUaaaggguaAAUAUUCAAGCUAgAUACa -3'
miRNA:   3'- gUAGAAaa------UUGUAGGUUCGAUaUAUG- -5'
28292 3' -38.8 NC_005902.1 + 125545 0.74 0.999999
Target:  5'- -----gUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 124390 0.75 0.999996
Target:  5'- -cUC-UUUAACAUCUAAGCUAUAc-- -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 122899 0.91 0.815291
Target:  5'- uCAUCUUUUAACAUCUAAGUgAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 122643 0.89 0.886433
Target:  5'- -cUC-UUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 122515 0.68 1
Target:  5'- gUAUUUacgUUUAACcUCUAGGUUAUAUACc -3'
miRNA:   3'- -GUAGA---AAAUUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 120240 0.73 1
Target:  5'- -cUCUaacccUUUAACAcCUGAGCUAUAUGCu -3'
miRNA:   3'- guAGA-----AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 119011 0.7 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118649 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118518 0.73 1
Target:  5'- gAUUUUUUAAUcUuuGAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGuAggUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118435 0.79 0.99943
Target:  5'- --gCUUUcAACAUCUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAaUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 118294 0.78 0.999792
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 117732 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUGCa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 117044 0.68 1
Target:  5'- --cCUUUUAAUAcUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116831 0.82 0.995679
Target:  5'- ----cUUUAACAUCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116632 0.8 0.998879
Target:  5'- --cUUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 114547 0.68 1
Target:  5'- ----cUUUAACAcCUAGGCUAUAUAa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 114358 0.71 1
Target:  5'- ------cUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaaAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.