Results 81 - 100 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 3' | -38.8 | NC_005902.1 | + | 80735 | 0.77 | 0.999911 |
Target: 5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3' miRNA: 3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 42238 | 0.76 | 0.999982 |
Target: 5'- --cCUcUUAACAcCUAAGCUAUAUACa -3' miRNA: 3'- guaGAaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 91860 | 0.76 | 0.999982 |
Target: 5'- ----cUUUAACAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 113600 | 0.76 | 0.999991 |
Target: 5'- uUAUCcUUUAAUAUCUAAGC-AUAUACu -3' miRNA: 3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 23313 | 0.75 | 0.999996 |
Target: 5'- ------aUAACAUCUAAGCUAUAUGu -3' miRNA: 3'- guagaaaAUUGUAGGUUCGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 13185 | 0.74 | 1 |
Target: 5'- ----cUUUAACAcCUAAGCUAUAUACc -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 23420 | 0.73 | 1 |
Target: 5'- --------cACAUUCAAGCUAUAUACu -3' miRNA: 3'- guagaaaauUGUAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 162017 | 0.82 | 0.995679 |
Target: 5'- uCAUCUUUUAAUAUUUAAGC-AUAUACu -3' miRNA: 3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 41021 | 0.82 | 0.992927 |
Target: 5'- aAUCUUUUAAUAcUUAAGCUAUAUACa -3' miRNA: 3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 45079 | 0.84 | 0.985405 |
Target: 5'- --cCUUUUAACAcCUAAGCUAUAUACu -3' miRNA: 3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 114358 | 0.71 | 1 |
Target: 5'- ------cUAACAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaaaAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 130885 | 0.71 | 1 |
Target: 5'- ----cUUUAAC-UCuCAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGuAG-GUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 40970 | 0.71 | 1 |
Target: 5'- ----cUUUAAUAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 16874 | 0.7 | 1 |
Target: 5'- uUAUCcUUUAACAcCUAAGCUAUAUc- -3' miRNA: 3'- -GUAGaAAAUUGUaGGUUCGAUAUAug -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 23259 | 0.7 | 1 |
Target: 5'- ----cUUUAACAcCUAAGCUAUAUAUu -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 92158 | 0.92 | 0.795139 |
Target: 5'- aAUCUUUUAACAaCUAAGCUAUAUACu -3' miRNA: 3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 85055 | 0.9 | 0.87023 |
Target: 5'- --cUUUUUAACAUCUAGGCUAUAUACu -3' miRNA: 3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 61623 | 0.88 | 0.921773 |
Target: 5'- ----cUUUAACAUCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 143021 | 0.87 | 0.949451 |
Target: 5'- ----cUUUAACAUCUAAGCUAUAUACu -3' miRNA: 3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 137434 | 0.85 | 0.972912 |
Target: 5'- --cCUUUUAACAUCUAAGCUAUAcACu -3' miRNA: 3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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