miRNA display CGI


Results 101 - 120 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 103990 0.7 1
Target:  5'- ----aUUUAAUAUUUAAGCUAUAUAUu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 50822 0.7 1
Target:  5'- ----cUUUAACAUCUAAaCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 87126 0.69 1
Target:  5'- -----gUUAAUAUUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172608 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146425 0.69 1
Target:  5'- aAUCcUUUAACAcCUAAGCUAUAa-- -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 113600 0.76 0.999991
Target:  5'- uUAUCcUUUAAUAUCUAAGC-AUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 91860 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 92158 0.92 0.795139
Target:  5'- aAUCUUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85055 0.9 0.87023
Target:  5'- --cUUUUUAACAUCUAGGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 61623 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143021 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137434 0.85 0.972912
Target:  5'- --cCUUUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 45079 0.84 0.985405
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 41021 0.82 0.992927
Target:  5'- aAUCUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162017 0.82 0.995679
Target:  5'- uCAUCUUUUAAUAUUUAAGC-AUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116632 0.8 0.998879
Target:  5'- --cUUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 118435 0.79 0.99943
Target:  5'- --gCUUUcAACAUCUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAaUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 174577 0.78 0.99987
Target:  5'- uGUCUUugauagugaccgagUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- gUAGAA--------------AAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 80735 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 42238 0.76 0.999982
Target:  5'- --cCUcUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAaAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.