miRNA display CGI


Results 121 - 140 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 3024 0.85 0.975879
Target:  5'- -----aUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85908 0.83 0.988926
Target:  5'- ----cUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 5651 0.69 1
Target:  5'- ----cUUUAACAaUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54343 0.7 1
Target:  5'- -----aUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 165943 0.7 1
Target:  5'- aCAcCUUUUAAUAcUUAAGCUAUAUAUa -3'
miRNA:   3'- -GUaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51424 0.8 0.999099
Target:  5'- -----gUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54048 0.79 0.99965
Target:  5'- aUAUCcUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 4196 0.78 0.99988
Target:  5'- --cCUUUUAAUAUUUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 8171 0.77 0.999965
Target:  5'- aAUCc--UAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 47238 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 163512 0.76 0.999991
Target:  5'- -----aUUAACAUCUAAGCUAUAaACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 40672 0.75 0.999994
Target:  5'- ----cUUUAACGUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 147755 0.75 0.999998
Target:  5'- ----cUUUAACAUCUAAGCUAUAa-- -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 13185 0.74 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACc -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 95764 0.73 1
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67706 0.72 1
Target:  5'- --cCUUUUAAC-UCCuAGGCUAUAUAg -3'
miRNA:   3'- guaGAAAAUUGuAGG-UUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 156786 0.72 1
Target:  5'- aAUCc--UAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 52773 0.71 1
Target:  5'- --cCUUUUAACAcCUAAGUUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 149799 0.71 1
Target:  5'- ---aUUUUAACAcCUAAGUUAUGUACu -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71209 0.71 1
Target:  5'- --cCUUUUAAUGcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.