miRNA display CGI


Results 141 - 160 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 134329 0.68 1
Target:  5'- ----cUUUAACAUUUAAGC-AUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 47186 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71209 0.71 1
Target:  5'- --cCUUUUAAUGcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 153032 0.81 0.997927
Target:  5'- --aCUUUUaAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guaGAAAA-UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 111230 0.8 0.9983
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 178359 0.68 1
Target:  5'- aAUUUUUUuACucuacCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAuUGua---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172818 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71602 0.81 0.996972
Target:  5'- aAUCcUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137900 0.81 0.996972
Target:  5'- -----gUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 49955 0.71 1
Target:  5'- ----cUUUAAC-UCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 133624 0.68 1
Target:  5'- -----gUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76870 0.8 0.9983
Target:  5'- aAUUcUUUAAUAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146731 0.83 0.990418
Target:  5'- gUAUCcUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 135892 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 4608 0.82 0.993968
Target:  5'- aUAUCcUUUAACAUCUAAGCgAUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 184864 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUGUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81834 0.71 1
Target:  5'- aAUCccUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- gUAGa-AAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 138766 0.81 0.996373
Target:  5'- aAUCUcaacacaAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAaaa----UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 111387 0.67 1
Target:  5'- aUAUCgcUUUAACAccacCUAAGUUAUAUACu -3'
miRNA:   3'- -GUAGa-AAAUUGUa---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 60469 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.