Results 61 - 80 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 3' | -38.8 | NC_005902.1 | + | 183490 | 0.67 | 1 |
Target: 5'- --gCUgaaauauGCAUCCAAGCUAgauUACc -3' miRNA: 3'- guaGAaaau---UGUAGGUUCGAUau-AUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 109996 | 0.67 | 1 |
Target: 5'- uUAUCcUUcAAUAUCUAAGCUAUAUu- -3' miRNA: 3'- -GUAGaAAaUUGUAGGUUCGAUAUAug -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 67360 | 0.68 | 1 |
Target: 5'- --cCUUUUAACAaCUAAGUUAgAUACa -3' miRNA: 3'- guaGAAAAUUGUaGGUUCGAUaUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 98815 | 0.69 | 1 |
Target: 5'- --cCUUUUAACA-CUuauGCUAUAUACu -3' miRNA: 3'- guaGAAAAUUGUaGGuu-CGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 12816 | 0.69 | 1 |
Target: 5'- aAUCUUUUAACccuuuaacUCCuAAGUUAUAUAUa -3' miRNA: 3'- gUAGAAAAUUGu-------AGG-UUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 140050 | 0.69 | 1 |
Target: 5'- uCAUCaUUUAAUAcUUAAGCUAUAUAUu -3' miRNA: 3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 54889 | 0.69 | 1 |
Target: 5'- -----cUUAAUAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 36800 | 0.69 | 1 |
Target: 5'- --cCUUUUAACAcUUAAGCUAUAcACa -3' miRNA: 3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 158110 | 0.69 | 1 |
Target: 5'- uUAUCUuuaacccUUUAAUAcUUAAGCUAUAUACa -3' miRNA: 3'- -GUAGA-------AAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 148750 | 0.69 | 1 |
Target: 5'- uUAUCcUUUAACAcUUAAGCUAUAUGa -3' miRNA: 3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 133624 | 0.68 | 1 |
Target: 5'- -----gUUAACAcUUAAGCUAUAUACa -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 178359 | 0.68 | 1 |
Target: 5'- aAUUUUUUuACucuacCUAAGCUAUAUACa -3' miRNA: 3'- gUAGAAAAuUGua---GGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 90061 | 0.68 | 1 |
Target: 5'- -----cUUAACAcCUAAGUUAUAUACa -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 32357 | 0.68 | 1 |
Target: 5'- -----gUUAACAUCUAAaCUAUAUACu -3' miRNA: 3'- guagaaAAUUGUAGGUUcGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 158231 | 0.68 | 1 |
Target: 5'- ----cUUUAAUGcCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 122515 | 0.68 | 1 |
Target: 5'- gUAUUUacgUUUAACcUCUAGGUUAUAUACc -3' miRNA: 3'- -GUAGA---AAAUUGuAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 114547 | 0.68 | 1 |
Target: 5'- ----cUUUAACAcCUAGGCUAUAUAa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 107921 | 0.68 | 1 |
Target: 5'- --cCUUUauaAAC-UCUAAGCUAUAUACu -3' miRNA: 3'- guaGAAAa--UUGuAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 22618 | 0.68 | 1 |
Target: 5'- -----gUUAACAcCUAAGCUAUAUAUu -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 48508 | 0.68 | 1 |
Target: 5'- -----gUUAAUAUCUAAGCcAUAUACu -3' miRNA: 3'- guagaaAAUUGUAGGUUCGaUAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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