miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 175764 0.69 1
Target:  5'- --------uAC-UCCAAGCUAUAUACa -3'
miRNA:   3'- guagaaaauUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 113235 0.69 1
Target:  5'- cCAUCUUUaAACAUCCAAuugAUAUAUu -3'
miRNA:   3'- -GUAGAAAaUUGUAGGUUcgaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 160882 0.7 1
Target:  5'- ----aUUUAACccCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23977 0.7 1
Target:  5'- aAUCcUUUAACAUCUAAaCUAUAUAa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUcGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 169126 0.7 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146672 0.7 1
Target:  5'- --cCUUUUAAaAUCUAAGgUGUAUACa -3'
miRNA:   3'- guaGAAAAUUgUAGGUUCgAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 90418 0.7 1
Target:  5'- aUAUCacUUUAACAUCUAAGUgUAUAUAUa -3'
miRNA:   3'- -GUAGa-AAAUUGUAGGUUCG-AUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 148750 0.69 1
Target:  5'- uUAUCcUUUAACAcUUAAGCUAUAUGa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 158110 0.69 1
Target:  5'- uUAUCUuuaacccUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGA-------AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36800 0.69 1
Target:  5'- --cCUUUUAACAcUUAAGCUAUAcACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 22618 0.68 1
Target:  5'- -----gUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 48508 0.68 1
Target:  5'- -----gUUAAUAUCUAAGCcAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 178359 0.68 1
Target:  5'- aAUUUUUUuACucuacCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAuUGua---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 133624 0.68 1
Target:  5'- -----gUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67360 0.68 1
Target:  5'- --cCUUUUAACAaCUAAGUUAgAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUaUAUG- -5'
28292 3' -38.8 NC_005902.1 + 98815 0.69 1
Target:  5'- --cCUUUUAACA-CUuauGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGuu-CGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 12816 0.69 1
Target:  5'- aAUCUUUUAACccuuuaacUCCuAAGUUAUAUAUa -3'
miRNA:   3'- gUAGAAAAUUGu-------AGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140050 0.69 1
Target:  5'- uCAUCaUUUAAUAcUUAAGCUAUAUAUu -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 54889 0.69 1
Target:  5'- -----cUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 88567 0.7 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.