Results 101 - 120 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 3' | -38.8 | NC_005902.1 | + | 11407 | 0.7 | 1 |
Target: 5'- -cUC-UUUAACAcUUAAGCUAUAUACu -3' miRNA: 3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 76770 | 0.7 | 1 |
Target: 5'- --aUUUUUAaaggauuACAUUUAGGCUAUAUACa -3' miRNA: 3'- guaGAAAAU-------UGUAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 41853 | 0.71 | 1 |
Target: 5'- ----cUUUAACAUCUAAaCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUAGGUUcGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 31419 | 0.71 | 1 |
Target: 5'- ----cUUUAAUAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 184864 | 0.71 | 1 |
Target: 5'- ----cUUUAACAcCUAAGCUGUAUAUa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 23977 | 0.7 | 1 |
Target: 5'- aAUCcUUUAACAUCUAAaCUAUAUAa -3' miRNA: 3'- gUAGaAAAUUGUAGGUUcGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 160882 | 0.7 | 1 |
Target: 5'- ----aUUUAACccCUAAGCUAUAUACu -3' miRNA: 3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 67360 | 0.68 | 1 |
Target: 5'- --cCUUUUAACAaCUAAGUUAgAUACa -3' miRNA: 3'- guaGAAAAUUGUaGGUUCGAUaUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 98815 | 0.69 | 1 |
Target: 5'- --cCUUUUAACA-CUuauGCUAUAUACu -3' miRNA: 3'- guaGAAAAUUGUaGGuu-CGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 12816 | 0.69 | 1 |
Target: 5'- aAUCUUUUAACccuuuaacUCCuAAGUUAUAUAUa -3' miRNA: 3'- gUAGAAAAUUGu-------AGG-UUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 140050 | 0.69 | 1 |
Target: 5'- uCAUCaUUUAAUAcUUAAGCUAUAUAUu -3' miRNA: 3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 54889 | 0.69 | 1 |
Target: 5'- -----cUUAAUAcCUAAGCUAUAUACa -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 36800 | 0.69 | 1 |
Target: 5'- --cCUUUUAACAcUUAAGCUAUAcACa -3' miRNA: 3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 158110 | 0.69 | 1 |
Target: 5'- uUAUCUuuaacccUUUAAUAcUUAAGCUAUAUACa -3' miRNA: 3'- -GUAGA-------AAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 148750 | 0.69 | 1 |
Target: 5'- uUAUCcUUUAACAcUUAAGCUAUAUGa -3' miRNA: 3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 63239 | 0.69 | 1 |
Target: 5'- ----cUUUAACccCUAAGCUAUAUACu -3' miRNA: 3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 58397 | 0.69 | 1 |
Target: 5'- aUAUUUUUUAACAUUUAuaCUAUAUACu -3' miRNA: 3'- -GUAGAAAAUUGUAGGUucGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 177892 | 0.69 | 1 |
Target: 5'- -----aUUAAUAaCUAAGCUAUAUACg -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 175764 | 0.69 | 1 |
Target: 5'- --------uAC-UCCAAGCUAUAUACa -3' miRNA: 3'- guagaaaauUGuAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 113235 | 0.69 | 1 |
Target: 5'- cCAUCUUUaAACAUCCAAuugAUAUAUu -3' miRNA: 3'- -GUAGAAAaUUGUAGGUUcgaUAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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