miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 130953 0.66 1
Target:  5'- aAUCcUUUAAUAcUUAAGUUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174974 0.66 1
Target:  5'- ------cUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 21170 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 45314 0.66 1
Target:  5'- aGUUgggUUAAaAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaa-AAUUgUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1262 0.66 1
Target:  5'- -cUCUUc-AACAcCUAGGCUAUAUAUa -3'
miRNA:   3'- guAGAAaaUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 58536 0.66 1
Target:  5'- ----cUUUAACAcUgAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGgUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 69065 0.66 1
Target:  5'- uUAUUUgUUAACAcCUAAGCUuaAUAUGCu -3'
miRNA:   3'- -GUAGAaAAUUGUaGGUUCGA--UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1148 0.66 1
Target:  5'- ----cUUUAAgAcCUAAGCUGUAUACa -3'
miRNA:   3'- guagaAAAUUgUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 127527 0.66 1
Target:  5'- aGUCUUaaaggguaAAUAUUCAAGCUAgAUACa -3'
miRNA:   3'- gUAGAAaa------UUGUAGGUUCGAUaUAUG- -5'
28292 3' -38.8 NC_005902.1 + 98617 0.66 1
Target:  5'- uUAUUUUUUAACcuuuuacccccuucAUacCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGAAAAUUG--------------UA--GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67590 0.66 1
Target:  5'- -----gUUAACAUCUAAGCUcauuUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAu---AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 131667 0.66 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 177828 0.66 1
Target:  5'- -----aUUAACuuugCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGua--GG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 142148 0.66 1
Target:  5'- --cUUUUUAAcCAUCUAuuuaAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUU-GUAGGU----UCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137754 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 109361 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 57237 0.66 1
Target:  5'- -cUC-UUUAACAUCUuAGCUGUGa-- -3'
miRNA:   3'- guAGaAAAUUGUAGGuUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 40068 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 179693 0.66 1
Target:  5'- uUAUCcUUUAAaacCUAAGCUAUAUAUa -3'
miRNA:   3'- -GUAGaAAAUUguaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 184748 0.66 1
Target:  5'- aAUCc--UAACAcCUGAGCUAUAUAUa -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.