miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 154912 1.13 0.115091
Target:  5'- uCAUCUUUUAACAUCCAAGCUAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 21310 0.96 0.627095
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174462 0.94 0.696572
Target:  5'- aAUCUUUUuACAUCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAuUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140686 0.94 0.707982
Target:  5'- -cUCUUUUAACAUCCAAGCUAUAa-- -3'
miRNA:   3'- guAGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 163388 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36163 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 92158 0.92 0.795139
Target:  5'- aAUCUUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 122899 0.91 0.815291
Target:  5'- uCAUCUUUUAACAUCUAAGUgAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 155201 0.91 0.834583
Target:  5'- uUAUCUuuuuaacccUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGA---------AAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134159 0.9 0.843877
Target:  5'- aGUCaUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85055 0.9 0.87023
Target:  5'- --cUUUUUAACAUCUAGGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 78211 0.89 0.878473
Target:  5'- -uUC-UUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 140865 0.89 0.886433
Target:  5'- uUAUUcUUUAACAUCUAAGCUGUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 122643 0.89 0.886433
Target:  5'- -cUC-UUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 148239 0.88 0.915313
Target:  5'- aAUCUUUUAACAUUUAAGCUuAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUAGGUUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 107786 0.88 0.921141
Target:  5'- aAUCUuaauuuuuaacucUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGA-------------AAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 51852 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 117732 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUGCa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 61623 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 30800 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.