miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 1148 0.66 1
Target:  5'- ----cUUUAAgAcCUAAGCUGUAUACa -3'
miRNA:   3'- guagaAAAUUgUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1203 0.68 1
Target:  5'- -----gUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1262 0.66 1
Target:  5'- -cUCUUc-AACAcCUAGGCUAUAUAUa -3'
miRNA:   3'- guAGAAaaUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1403 0.75 0.999996
Target:  5'- gCGUCaccuUUUUAACccCUAAGCUAUAUACg -3'
miRNA:   3'- -GUAG----AAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1711 0.72 1
Target:  5'- -uUC-UUUAAUAUCUAAGCUAUAUu- -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGAUAUAug -5'
28292 3' -38.8 NC_005902.1 + 3024 0.85 0.975879
Target:  5'- -----aUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 3077 0.72 1
Target:  5'- ----aUUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 3360 0.67 1
Target:  5'- cUAUCUUUUAguuuuuaaaggguuACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- -GUAGAAAAU--------------UGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 4196 0.78 0.99988
Target:  5'- --cCUUUUAAUAUUUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 4608 0.82 0.993968
Target:  5'- aUAUCcUUUAACAUCUAAGCgAUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 5114 0.71 1
Target:  5'- -cUC-UUUAACAUCUAAGCaAUAUAUu -3'
miRNA:   3'- guAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 5651 0.69 1
Target:  5'- ----cUUUAACAaUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 6000 0.76 0.999987
Target:  5'- -cUCUUUUAACAaCCGAGCUGUu--- -3'
miRNA:   3'- guAGAAAAUUGUaGGUUCGAUAuaug -5'
28292 3' -38.8 NC_005902.1 + 6184 0.69 1
Target:  5'- -cUCUUaaGGCAUUauuUAAGCUAUAUACa -3'
miRNA:   3'- guAGAAaaUUGUAG---GUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 8111 0.69 1
Target:  5'- ---aUUUUAAUAUaUAAGCUAUAUACu -3'
miRNA:   3'- guagAAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 8171 0.77 0.999965
Target:  5'- aAUCc--UAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 11407 0.7 1
Target:  5'- -cUC-UUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 11494 0.86 0.966205
Target:  5'- --cUUUUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 12816 0.69 1
Target:  5'- aAUCUUUUAACccuuuaacUCCuAAGUUAUAUAUa -3'
miRNA:   3'- gUAGAAAAUUGu-------AGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 13185 0.74 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACc -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.